Identification of bacterial groups preferentially associated with mycorrhizal roots of Medicago truncatula.
Identifieur interne : 002F72 ( Main/Exploration ); précédent : 002F71; suivant : 002F73Identification of bacterial groups preferentially associated with mycorrhizal roots of Medicago truncatula.
Auteurs : P. Offre [France] ; B. Pivato ; S. Siblot ; E. Gamalero ; T. Corberand ; P. Lemanceau ; C. MougelSource :
- Applied and environmental microbiology [ 0099-2240 ] ; 2007.
Descripteurs français
- KwdFr :
- ADN bactérien (analyse), ADN bactérien (isolement et purification), Analyse de séquence d'ADN (MeSH), Betaproteobacteria (classification), Betaproteobacteria (génétique), Betaproteobacteria (isolement et purification), Données de séquences moléculaires (MeSH), Espaceur de l'ADN ribosomique (analyse), Medicago truncatula (croissance et développement), Medicago truncatula (génétique), Medicago truncatula (microbiologie), Microbiologie du sol (MeSH), Mycorhizes (MeSH), Profilage d'ADN (méthodes), Racines de plante (microbiologie), Symbiose (génétique).
- MESH :
- analyse : ADN bactérien, Espaceur de l'ADN ribosomique.
- croissance et développement : Medicago truncatula.
- génétique : Betaproteobacteria, Medicago truncatula, Symbiose.
- isolement et purification : ADN bactérien, Betaproteobacteria.
- microbiologie : Medicago truncatula, Racines de plante.
- méthodes : Profilage d'ADN.
- classification : Analyse de séquence d'ADN, Betaproteobacteria, Données de séquences moléculaires, Microbiologie du sol, Mycorhizes.
English descriptors
- KwdEn :
- Betaproteobacteria (classification), Betaproteobacteria (genetics), Betaproteobacteria (isolation & purification), DNA Fingerprinting (methods), DNA, Bacterial (analysis), DNA, Bacterial (isolation & purification), DNA, Ribosomal Spacer (analysis), Medicago truncatula (genetics), Medicago truncatula (growth & development), Medicago truncatula (microbiology), Molecular Sequence Data (MeSH), Mycorrhizae (MeSH), Plant Roots (microbiology), Sequence Analysis, DNA (MeSH), Soil Microbiology (MeSH), Symbiosis (genetics).
- MESH :
- chemical , analysis : DNA, Bacterial, DNA, Ribosomal Spacer.
- classification : Betaproteobacteria.
- genetics : Betaproteobacteria, Medicago truncatula, Symbiosis.
- growth & development : Medicago truncatula.
- isolation & purification : Betaproteobacteria, DNA, Bacterial.
- methods : DNA Fingerprinting.
- microbiology : Medicago truncatula, Plant Roots.
- Molecular Sequence Data, Mycorrhizae, Sequence Analysis, DNA, Soil Microbiology.
Abstract
The genetic structures of bacterial communities associated with Medicago truncatula Gaertn. cv. Jemalong line J5 (Myc+ Nod+) and its symbiosis-defective mutants TRV48 (Myc+ Nod-) and TRV25 (Myc- Nod-) were compared. Plants were cultivated in a fertile soil (Châteaurenard, France) and in soil from the Mediterranean basin showing a low fertility (Mas d'Imbert, France). Plant growth, root architecture, and the efficiency of root symbiosis of the three plant genotypes were characterized in the two soils. Structures of the bacterial communities were assessed by automated-ribosomal intergenic spacer analysis (A-RISA) fingerprinting from DNA extracted from the rhizosphere soil and root tissues. As expected, the TRV25 mutant did not develop endomycorrhizal symbiosis in any of the soils, whereas mycorrhization of line J5 and the TRV48 mutant occurred in both soils but at a higher intensity in the Mas d'Imbert (low fertility) than in the Châteaurenard soil. However, modifications of plant growth and root architecture, between mycorrhizal (J5 and TRV48) and nonmycorrhizal (TRV25) plants, were recorded only when cultivated in the Mas d'Imbert soil. Similarly, the genetic structures of bacterial communities associated with mycorrhizal and nonmycorrhizal plants differed significantly in the Mas d'Imbert soil but not in the Châteaurenard soil. Multivariate analysis of the patterns allowed the identification of molecular markers, explaining these differences, and markers were further sequenced. Molecular marker analysis allowed the delineation of 211 operational taxonomic units. Some of those belonging to the Comamonadaceae and Oxalobacteraceae (beta-Proteobacteria) families were found to be significantly more represented within bacterial communities associated with the J5 line and the TRV48 mutant than within those associated with the TRV25 mutant, indicating that these bacterial genera were preferentially associated with mycorrhizal roots in the Mas d'Imbert soil.
DOI: 10.1128/AEM.02042-06
PubMed: 17142371
PubMed Central: PMC1800773
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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Jemalong line J5 (Myc+ Nod+) and its symbiosis-defective mutants TRV48 (Myc+ Nod-) and TRV25 (Myc- Nod-) were compared. Plants were cultivated in a fertile soil (Châteaurenard, France) and in soil from the Mediterranean basin showing a low fertility (Mas d'Imbert, France). Plant growth, root architecture, and the efficiency of root symbiosis of the three plant genotypes were characterized in the two soils. Structures of the bacterial communities were assessed by automated-ribosomal intergenic spacer analysis (A-RISA) fingerprinting from DNA extracted from the rhizosphere soil and root tissues. As expected, the TRV25 mutant did not develop endomycorrhizal symbiosis in any of the soils, whereas mycorrhization of line J5 and the TRV48 mutant occurred in both soils but at a higher intensity in the Mas d'Imbert (low fertility) than in the Châteaurenard soil. However, modifications of plant growth and root architecture, between mycorrhizal (J5 and TRV48) and nonmycorrhizal (TRV25) plants, were recorded only when cultivated in the Mas d'Imbert soil. Similarly, the genetic structures of bacterial communities associated with mycorrhizal and nonmycorrhizal plants differed significantly in the Mas d'Imbert soil but not in the Châteaurenard soil. Multivariate analysis of the patterns allowed the identification of molecular markers, explaining these differences, and markers were further sequenced. Molecular marker analysis allowed the delineation of 211 operational taxonomic units. Some of those belonging to the Comamonadaceae and Oxalobacteraceae (beta-Proteobacteria) families were found to be significantly more represented within bacterial communities associated with the J5 line and the TRV48 mutant than within those associated with the TRV25 mutant, indicating that these bacterial genera were preferentially associated with mycorrhizal roots in the Mas d'Imbert soil.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">17142371</PMID><DateCompleted><Year>2007</Year><Month>03</Month><Day>27</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Print">0099-2240</ISSN><JournalIssue CitedMedium="Print"><Volume>73</Volume><Issue>3</Issue><PubDate><Year>2007</Year><Month>Feb</Month></PubDate></JournalIssue><Title>Applied and environmental microbiology</Title><ISOAbbreviation>Appl Environ Microbiol</ISOAbbreviation></Journal><ArticleTitle>Identification of bacterial groups preferentially associated with mycorrhizal roots of Medicago truncatula.</ArticleTitle><Pagination><MedlinePgn>913-21</MedlinePgn></Pagination><Abstract><AbstractText>The genetic structures of bacterial communities associated with Medicago truncatula Gaertn. cv. Jemalong line J5 (Myc+ Nod+) and its symbiosis-defective mutants TRV48 (Myc+ Nod-) and TRV25 (Myc- Nod-) were compared. Plants were cultivated in a fertile soil (Châteaurenard, France) and in soil from the Mediterranean basin showing a low fertility (Mas d'Imbert, France). Plant growth, root architecture, and the efficiency of root symbiosis of the three plant genotypes were characterized in the two soils. Structures of the bacterial communities were assessed by automated-ribosomal intergenic spacer analysis (A-RISA) fingerprinting from DNA extracted from the rhizosphere soil and root tissues. As expected, the TRV25 mutant did not develop endomycorrhizal symbiosis in any of the soils, whereas mycorrhization of line J5 and the TRV48 mutant occurred in both soils but at a higher intensity in the Mas d'Imbert (low fertility) than in the Châteaurenard soil. However, modifications of plant growth and root architecture, between mycorrhizal (J5 and TRV48) and nonmycorrhizal (TRV25) plants, were recorded only when cultivated in the Mas d'Imbert soil. Similarly, the genetic structures of bacterial communities associated with mycorrhizal and nonmycorrhizal plants differed significantly in the Mas d'Imbert soil but not in the Châteaurenard soil. Multivariate analysis of the patterns allowed the identification of molecular markers, explaining these differences, and markers were further sequenced. Molecular marker analysis allowed the delineation of 211 operational taxonomic units. Some of those belonging to the Comamonadaceae and Oxalobacteraceae (beta-Proteobacteria) families were found to be significantly more represented within bacterial communities associated with the J5 line and the TRV48 mutant than within those associated with the TRV25 mutant, indicating that these bacterial genera were preferentially associated with mycorrhizal roots in the Mas d'Imbert soil.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Offre</LastName><ForeName>P</ForeName><Initials>P</Initials><AffiliationInfo><Affiliation>INRA-Université de Bourgogne, UMR Microbiologie et Géochimie des Sols, CMSE, 17 rue Sully, BP 86510, 21065 Dijon Cedex, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Pivato</LastName><ForeName>B</ForeName><Initials>B</Initials></Author><Author ValidYN="Y"><LastName>Siblot</LastName><ForeName>S</ForeName><Initials>S</Initials></Author><Author ValidYN="Y"><LastName>Gamalero</LastName><ForeName>E</ForeName><Initials>E</Initials></Author><Author ValidYN="Y"><LastName>Corberand</LastName><ForeName>T</ForeName><Initials>T</Initials></Author><Author ValidYN="Y"><LastName>Lemanceau</LastName><ForeName>P</ForeName><Initials>P</Initials></Author><Author ValidYN="Y"><LastName>Mougel</LastName><ForeName>C</ForeName><Initials>C</Initials></Author></AuthorList><Language>eng</Language><DataBankList 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States</Country><MedlineTA>Appl Environ Microbiol</MedlineTA><NlmUniqueID>7605801</NlmUniqueID><ISSNLinking>0099-2240</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004269">DNA, Bacterial</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D021903">DNA, Ribosomal Spacer</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D020562" MajorTopicYN="N">Betaproteobacteria</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000302" MajorTopicYN="Y">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D016172" MajorTopicYN="N">DNA Fingerprinting</DescriptorName><QualifierName UI="Q000379" MajorTopicYN="N">methods</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004269" MajorTopicYN="N">DNA, Bacterial</DescriptorName><QualifierName UI="Q000032" MajorTopicYN="N">analysis</QualifierName><QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D021903" MajorTopicYN="N">DNA, Ribosomal Spacer</DescriptorName><QualifierName UI="Q000032" MajorTopicYN="N">analysis</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D046913" MajorTopicYN="N">Medicago truncatula</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D038821" 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sortKey="Corberand, T" sort="Corberand, T" uniqKey="Corberand T" first="T" last="Corberand">T. Corberand</name><name sortKey="Gamalero, E" sort="Gamalero, E" uniqKey="Gamalero E" first="E" last="Gamalero">E. Gamalero</name><name sortKey="Lemanceau, P" sort="Lemanceau, P" uniqKey="Lemanceau P" first="P" last="Lemanceau">P. Lemanceau</name><name sortKey="Mougel, C" sort="Mougel, C" uniqKey="Mougel C" first="C" last="Mougel">C. Mougel</name><name sortKey="Pivato, B" sort="Pivato, B" uniqKey="Pivato B" first="B" last="Pivato">B. Pivato</name><name sortKey="Siblot, S" sort="Siblot, S" uniqKey="Siblot S" first="S" last="Siblot">S. Siblot</name></noCountry><country name="France"><region name="Bourgogne-Franche-Comté"><name sortKey="Offre, P" sort="Offre, P" uniqKey="Offre P" first="P" last="Offre">P. Offre</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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